:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'haslr' .. highlight: bash haslr ===== .. conda:recipe:: haslr :replaces_section_title: :noindex: A fast tool for hybrid genome assembly of long and short reads :homepage: https://github.com/vpc-ccg/haslr :license: GPL3 :recipe: /`haslr `_/`meta.yaml `_ .. conda:package:: haslr |downloads_haslr| |docker_haslr| :versions: ``0.8a1-4``,  ``0.8a1-3``,  ``0.8a1-2``,  ``0.8a1-1``,  ``0.8a1-0`` :depends fastutils: ``>=0.2`` :depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :depends libzlib: ``>=1.2.13,<1.3.0a0`` :depends minia: ``>=3.2.1`` :depends minimap2: ``>=2.17`` :depends python: ``>=3.10,<3.11.0a0`` :depends python_abi: ``3.10.* *_cp310`` :depends zlib: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install haslr and update with:: mamba update haslr To create a new environment, run:: mamba create --name myenvname haslr with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/haslr: (see `haslr/tags`_ for valid values for ````) .. |downloads_haslr| image:: https://img.shields.io/conda/dn/bioconda/haslr.svg?style=flat :target: https://anaconda.org/bioconda/haslr :alt: (downloads) .. |docker_haslr| image:: https://quay.io/repository/biocontainers/haslr/status :target: https://quay.io/repository/biocontainers/haslr .. _`haslr/tags`: https://quay.io/repository/biocontainers/haslr?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/haslr/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/haslr/README.html