:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'hg-color' .. highlight: bash hg-color ======== .. conda:recipe:: hg-color :replaces_section_title: :noindex: HG\-CoLoR \(Hybrid Graph for the error Correction of Long Reads\) is a hybrid method for the error correction of long reads that follows the main idea from NaS to produce corrected long reads from assemblies of related accurate short reads. :homepage: https://github.com/pierre-morisse/HG-CoLoR :license: GNU General Public License (GPL) :recipe: /`hg-color `_/`meta.yaml `_ .. conda:package:: hg-color |downloads_hg-color| |docker_hg-color| :versions: ``1.1.1-1``,  ``1.1.1-0``,  ``1.0.0-3``,  ``1.0.0-2``,  ``1.0.0-1`` :depends coreutils: :depends emboss: :depends kmc: :depends libgcc-ng: ``>=7.3.0`` :depends libstdcxx-ng: ``>=7.3.0`` :depends parallel: :depends pgsa: :depends python: :depends quorum: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install hg-color and update with:: mamba update hg-color To create a new environment, run:: mamba create --name myenvname hg-color with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/hg-color: (see `hg-color/tags`_ for valid values for ````) .. |downloads_hg-color| image:: https://img.shields.io/conda/dn/bioconda/hg-color.svg?style=flat :target: https://anaconda.org/bioconda/hg-color :alt: (downloads) .. |docker_hg-color| image:: https://quay.io/repository/biocontainers/hg-color/status :target: https://quay.io/repository/biocontainers/hg-color .. _`hg-color/tags`: https://quay.io/repository/biocontainers/hg-color?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/hg-color/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/hg-color/README.html