:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'hmmcopy' .. highlight: bash hmmcopy ======= .. conda:recipe:: hmmcopy :replaces_section_title: :noindex: C\+\+ based programs for analyzing BAM files and preparing read counts \-\- used with bioconductor\-hmmcopy :homepage: http://compbio.bccrc.ca/software/hmmcopy/ :license: GPL-3 :recipe: /`hmmcopy `_/`meta.yaml `_ .. conda:package:: hmmcopy |downloads_hmmcopy| |docker_hmmcopy| :versions: .. raw:: html
0.1.1-100.1.1-90.1.1-80.1.1-70.1.1-60.1.1-50.1.1-40.1.1-30.1.1-2 ``0.1.1-10``,  ``0.1.1-9``,  ``0.1.1-8``,  ``0.1.1-7``,  ``0.1.1-6``,  ``0.1.1-5``,  ``0.1.1-4``,  ``0.1.1-3``,  ``0.1.1-2``,  ``0.1.1-1``,  ``0.1.1-0`` .. raw:: html
:depends bowtie: :depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :depends libzlib: ``>=1.2.13,<1.3.0a0`` :depends perl: :depends zlib: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install hmmcopy and update with:: mamba update hmmcopy To create a new environment, run:: mamba create --name myenvname hmmcopy with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/hmmcopy: (see `hmmcopy/tags`_ for valid values for ````) .. |downloads_hmmcopy| image:: https://img.shields.io/conda/dn/bioconda/hmmcopy.svg?style=flat :target: https://anaconda.org/bioconda/hmmcopy :alt: (downloads) .. |docker_hmmcopy| image:: https://quay.io/repository/biocontainers/hmmcopy/status :target: https://quay.io/repository/biocontainers/hmmcopy .. _`hmmcopy/tags`: https://quay.io/repository/biocontainers/hmmcopy?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/hmmcopy/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/hmmcopy/README.html