:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'homopolish' .. highlight: bash homopolish ========== .. conda:recipe:: homopolish :replaces_section_title: :noindex: Homopolish is a polish tools :homepage: https://github.com/ythuang0522/homopolish :license: GNU GENERAL PUBLIC LICENSE :recipe: /`homopolish `_/`meta.yaml `_ .. conda:package:: homopolish |downloads_homopolish| |docker_homopolish| :versions: ``0.4.1-1``,  ``0.4.1-0``,  ``0.3.3-0``,  ``0.2.1-0``,  ``0.0.2-0``,  ``0.0.1-0`` :depends _libgcc_mutex: ``>=0.1`` :depends _openmp_mutex: ``>=4.5`` :depends arrow-cpp: ``>=0.15.1`` :depends biopython: ``>=1.76`` :depends blas: ``>=2.17`` :depends boost: ``>=1.70.0,<1.70.1.0a0`` :depends boost-cpp: ``>=1.70.0`` :depends brotli: ``>=1.0.9`` :depends brotlipy: ``>=0.7.0`` :depends bzip2: ``>=1.0.8,<2.0a0`` :depends c-ares: ``>=1.16.1`` :depends ca-certificates: ``>=2022.07.19`` :depends capnproto: ``>=0.6.1`` :depends certifi: ``>=2022.6.15`` :depends cffi: ``>=1.14.3`` :depends chardet: ``>=3.0.4`` :depends colorama: ``>=0.4.4`` :depends cryptography: ``>=3.1.1`` :depends curl: ``>=7.78.0`` :depends double-conversion: ``>=3.1.5`` :depends fastani: ``1.32.*`` :depends feather-format: ``>=0.4.1`` :depends gflags: ``>=2.2.2`` :depends glog: ``>=0.4.0`` :depends grpc-cpp: ``>=1.25.0`` :depends gsl: ``2.4.*`` :depends icu: ``>=58.2`` :depends idna: ``>=2.10`` :depends joblib: ``>=0.15.1`` :depends k8: ``>=0.2.5`` :depends krb5: ``>=1.19.2`` :depends ld_impl_linux-64: ``>=2.33.1`` :depends libblas: ``>=3.8.0`` :depends libcblas: ``>=3.8.0`` :depends libcurl: ``>=7.78.0`` :depends libdeflate: ``>=1.0`` :depends libedit: ``>=3.1.20210910`` :depends libev: ``>=4.33`` :depends libffi: ``>=3.4.2,<3.5.0a0`` :depends libgcc-ng: ``>=12.1.0`` :depends libgfortran-ng: ``>=7.3.0`` :depends liblapack: ``>=3.8.0`` :depends liblapacke: ``>=3.8.0`` :depends libnghttp2: ``>=1.41.0`` :depends libopenblas: ``>=0.3.10`` :depends libprotobuf: ``>=3.10.1`` :depends libssh2: ``>=1.9.0`` :depends libstdcxx-ng: ``>=12.1.0`` :depends llvm-openmp: ``>=12.0.1`` :depends lz4-c: ``>=1.8.3`` :depends mash: ``2.1.1.*`` :depends minimap2: ``>=2.17`` :depends more-itertools: ``>=8.4.0`` :depends ncbi-datasets-cli: ``>=13.37.2`` :depends ncurses: ``>=6.3`` :depends numpy: ``1.18.5.*`` :depends numpy-base: ``1.18.5.*`` :depends openssl: ``>=1.1.0,<=1.1.1`` :depends pandas: ``>=0.23.4`` :depends parquet-cpp: ``>=1.5.1`` :depends pyarrow: ``>=0.15.1`` :depends pycparser: ``>=2.20`` :depends pycurl: ``>=7.43.0.6`` :depends pyopenssl: ``>=19.1.0`` :depends pysam: ``>=0.15.3`` :depends pysocks: ``>=1.7.1`` :depends python: :depends python-dateutil: ``>=2.8.1`` :depends python-wget: ``>=3.2`` :depends pytz: ``>=2020.1`` :depends re2: ``>=2019.08.01`` :depends readline: ``>=8.1.2,<9.0a0`` :depends requests: ``>=2.24.0`` :depends scikit-learn: ``0.21.3.*`` :depends scipy: ``>=1.5.2`` :depends setuptools: ``>=50.3.0`` :depends six: ``>=1.15.0`` :depends snappy: ``>=1.1.8`` :depends sqlite: ``>=3.33.0`` :depends thrift-cpp: ``>=0.12.0`` :depends tk: ``>=8.6.12,<8.7.0a0`` :depends tqdm: ``>=4.63.0`` :depends uriparser: ``>=0.9.3`` :depends urllib3: ``>=1.25.11`` :depends wheel: ``>=0.35.1`` :depends xz: ``>=5.2.6,<5.3.0a0`` :depends zlib: ``>=1.2.11,<1.3.0a0`` :depends zstd: ``>=1.4.4`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install homopolish and update with:: mamba update homopolish To create a new environment, run:: mamba create --name myenvname homopolish with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/homopolish: (see `homopolish/tags`_ for valid values for ````) .. |downloads_homopolish| image:: https://img.shields.io/conda/dn/bioconda/homopolish.svg?style=flat :target: https://anaconda.org/bioconda/homopolish :alt: (downloads) .. |docker_homopolish| image:: https://quay.io/repository/biocontainers/homopolish/status :target: https://quay.io/repository/biocontainers/homopolish .. _`homopolish/tags`: https://quay.io/repository/biocontainers/homopolish?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/homopolish/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/homopolish/README.html