:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'humann' .. highlight: bash humann ====== .. conda:recipe:: humann :replaces_section_title: :noindex: HUMAnN\: The HMP Unified Metabolic Analysis Network\, version 3 :homepage: http://huttenhower.sph.harvard.edu/humann :developer docs: https://github.com/biobakery/humann :license: MIT / MIT :recipe: /`humann `_/`meta.yaml `_ .. conda:package:: humann |downloads_humann| |docker_humann| :versions: ``3.0.1-0``,  ``3.0.0-1``,  ``3.0.0-0``,  ``3.0.0a4-0`` :depends bowtie2: ``>2.1`` :depends diamond: ``>=0.9.36`` :depends glpk: :depends metaphlan: ``>=3.0`` :depends python: :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install humann and update with:: conda update humann or use the docker container:: docker pull quay.io/biocontainers/humann: (see `humann/tags`_ for valid values for ````) .. |downloads_humann| image:: https://img.shields.io/conda/dn/bioconda/humann.svg?style=flat :target: https://anaconda.org/bioconda/humann :alt: (downloads) .. |docker_humann| image:: https://quay.io/repository/biocontainers/humann/status :target: https://quay.io/repository/biocontainers/humann .. _`humann/tags`: https://quay.io/repository/biocontainers/humann?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/humann/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/humann/README.html