:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'ice-cream'
.. highlight: bash

ice-cream
=========

.. conda:recipe:: ice-cream
   :replaces_section_title:
   :noindex:

   ICEcream\: Integrative and Conjugative Elements Classification and gRaphical gEne Arrangement Method

   :homepage: https://github.com/xinehc/ICEcream
   :license: MIT / MIT
   :recipe: /`ice-cream <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/ice-cream>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/ice-cream/meta.yaml>`_

   


.. conda:package:: ice-cream

   |downloads_ice-cream| |docker_ice-cream|

   :versions:
      
      

      ``1.10-1``,  ``1.10-0``

      

   
   :depends aragorn: 
   :depends biopython: 
   :depends blast: 
   :depends dna_features_viewer: 
   :depends hmmer: 
   :depends pandas: 
   :depends perl: ``>=5.26``
   :depends prodigal: 
   :depends prokka: 
   :depends python: ``>=3.6``
   :depends r-base: ``>=4.2``
   :depends r-reshape2: 
   :depends vmatch: 
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install ice-cream

   and update with::

      mamba update ice-cream

  To create a new environment, run::

      mamba create --name myenvname ice-cream

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/ice-cream:<tag>

   (see `ice-cream/tags`_ for valid values for ``<tag>``)


.. |downloads_ice-cream| image:: https://img.shields.io/conda/dn/bioconda/ice-cream.svg?style=flat
   :target: https://anaconda.org/bioconda/ice-cream
   :alt:   (downloads)
.. |docker_ice-cream| image:: https://quay.io/repository/biocontainers/ice-cream/status
   :target: https://quay.io/repository/biocontainers/ice-cream
.. _`ice-cream/tags`: https://quay.io/repository/biocontainers/ice-cream?tab=tags


.. raw:: html

    <script>
        var package = "ice-cream";
        var versions = ["1.10","1.10"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

Link to this page
-----------------

Render an |install-with-bioconda| badge with the following MarkDown::

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.. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat
   :target: http://bioconda.github.io/recipes/ice-cream/README.html