:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'idba' .. highlight: bash idba ==== .. conda:recipe:: idba :replaces_section_title: :noindex: IDBA is a practical iterative De Bruijn Graph De Novo Assembler for sequence assembly in bioinformatics. :homepage: http://i.cs.hku.hk/~alse/hkubrg/projects/idba_ud/ :license: GPL2 :recipe: /`idba `_/`meta.yaml `_ :links: biotools: :biotools:`idba`, doi: :doi:`10.1007/978-3-642-12683-3_28` .. conda:package:: idba |downloads_idba| |docker_idba| :versions: ``1.1.3-1``,  ``1.1.3-0``,  ``1.1.1-2``,  ``1.1.1-1`` :depends libgcc: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install idba and update with:: mamba update idba To create a new environment, run:: mamba create --name myenvname idba with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/idba: (see `idba/tags`_ for valid values for ````) .. |downloads_idba| image:: https://img.shields.io/conda/dn/bioconda/idba.svg?style=flat :target: https://anaconda.org/bioconda/idba :alt: (downloads) .. |docker_idba| image:: https://quay.io/repository/biocontainers/idba/status :target: https://quay.io/repository/biocontainers/idba .. _`idba/tags`: https://quay.io/repository/biocontainers/idba?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/idba/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/idba/README.html