:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'impute2' .. highlight: bash impute2 ======= .. conda:recipe:: impute2 :replaces_section_title: :noindex: Genotype imputation and haplotype phasing :homepage: https://mathgen.stats.ox.ac.uk/impute/impute_v2.html :license: Academic use, commerically restricted (http://www.stats.ox.ac.uk/~marchini/software/gwas/gwas.html#licence) :recipe: /`impute2 `_/`meta.yaml `_ :links: biotools: :biotools:`IMPUTE2`, doi: :doi:`10.1534/g3.111.001198` .. conda:package:: impute2 |downloads_impute2| |docker_impute2| :versions: ``2.3.2-2``,  ``2.3.2-1``,  ``2.3.2-0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install impute2 and update with:: mamba update impute2 To create a new environment, run:: mamba create --name myenvname impute2 with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/impute2: (see `impute2/tags`_ for valid values for ````) .. |downloads_impute2| image:: https://img.shields.io/conda/dn/bioconda/impute2.svg?style=flat :target: https://anaconda.org/bioconda/impute2 :alt: (downloads) .. |docker_impute2| image:: https://quay.io/repository/biocontainers/impute2/status :target: https://quay.io/repository/biocontainers/impute2 .. _`impute2/tags`: https://quay.io/repository/biocontainers/impute2?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/impute2/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/impute2/README.html