:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'iptkl' .. highlight: bash iptkl ===== .. conda:recipe:: iptkl :replaces_section_title: :noindex: IPTK is a library specialized in the analysis of HLA\-peptidomes identified through an immunopeptidomics pipeline. :homepage: https://github.com/ikmb/iptoolkit :documentation: https://iptk.readthedocs.io/en/latest/ :license: MIT / MIT :recipe: /`iptkl `_/`meta.yaml `_ .. conda:package:: iptkl |downloads_iptkl| |docker_iptkl| :versions: ``0.6.8-0``,  ``0.6.5-0``,  ``0.6.4-0`` :depends biopython: :depends bokeh: :depends colour: :depends dash: :depends goatools: :depends h5py: :depends holoviews: :depends logomaker: :depends lxml: :depends matplotlib-base: :depends mhcnames: :depends nglview: :depends numba: :depends pandas: :depends plotly: :depends pyopenms: :depends pyteomics: :depends python: :depends scikit-learn: :depends scipy: :depends seaborn: :depends tqdm: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install iptkl and update with:: mamba update iptkl To create a new environment, run:: mamba create --name myenvname iptkl with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/iptkl: (see `iptkl/tags`_ for valid values for ````) .. |downloads_iptkl| image:: https://img.shields.io/conda/dn/bioconda/iptkl.svg?style=flat :target: https://anaconda.org/bioconda/iptkl :alt: (downloads) .. |docker_iptkl| image:: https://quay.io/repository/biocontainers/iptkl/status :target: https://quay.io/repository/biocontainers/iptkl .. _`iptkl/tags`: https://quay.io/repository/biocontainers/iptkl?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/iptkl/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/iptkl/README.html