:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'iqtree' .. highlight: bash iqtree ====== .. conda:recipe:: iqtree :replaces_section_title: :noindex: Efficient phylogenomic software by maximum likelihood. :homepage: http://www.iqtree.org/ :documentation: http://www.iqtree.org/doc/ :developer docs: https://github.com/iqtree/iqtree2 :license: GPL2 / GPL-2.0-or-later :recipe: /`iqtree `_/`meta.yaml `_ :links: biotools: :biotools:`iq-tree`, doi: :doi:`10.1093/molbev/msu300`, doi: :doi:`10.1038/nmeth.4285`, doi: :doi:`10.1093/molbev/msx281`, doi: :doi:`10.1093/sysbio/syae008`, usegalaxy-eu: :usegalaxy-eu:`iqtree` .. conda:package:: iqtree |downloads_iqtree| |docker_iqtree| :versions: .. raw:: html
2.3.0-02.2.6-02.2.5-02.2.3-02.2.2.9-02.2.2.7-22.2.2.7-02.2.2.3-22.2.2.3-1 ``2.3.0-0``,  ``2.2.6-0``,  ``2.2.5-0``,  ``2.2.3-0``,  ``2.2.2.9-0``,  ``2.2.2.7-2``,  ``2.2.2.7-0``,  ``2.2.2.3-2``,  ``2.2.2.3-1``,  ``2.2.2.3-0``,  ``2.2.0.3-1``,  ``2.2.0.3-0``,  ``2.2.0_beta-1``,  ``2.2.0_beta-0``,  ``2.1.4_beta-0``,  ``2.1.2-0``,  ``2.0.3-1``,  ``2.0.3-0``,  ``1.6.12-1``,  ``1.6.12-0``,  ``1.6.11.1-0``,  ``1.6.11-0``,  ``1.6.10-0``,  ``1.6.9-1``,  ``1.6.9-0``,  ``1.6.8-0``,  ``1.6.7.2-0``,  ``1.6.7.1-0``,  ``1.6.7-1``,  ``1.6.7-0``,  ``1.6.6-0``,  ``1.5.5-2``,  ``1.5.5-1``,  ``1.5.5-0``,  ``1.5.3-2``,  ``1.5.3-1``,  ``1.5.3-0`` .. raw:: html
:depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :depends libzlib: ``>=1.2.13,<1.3.0a0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install iqtree and update with:: mamba update iqtree To create a new environment, run:: mamba create --name myenvname iqtree with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/iqtree: (see `iqtree/tags`_ for valid values for ````) .. |downloads_iqtree| image:: https://img.shields.io/conda/dn/bioconda/iqtree.svg?style=flat :target: https://anaconda.org/bioconda/iqtree :alt: (downloads) .. |docker_iqtree| image:: https://quay.io/repository/biocontainers/iqtree/status :target: https://quay.io/repository/biocontainers/iqtree .. _`iqtree/tags`: https://quay.io/repository/biocontainers/iqtree?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/iqtree/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/iqtree/README.html