:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'isoseq3' .. highlight: bash isoseq3 ======= .. conda:recipe:: isoseq3 :replaces_section_title: :noindex: Iso\-Seq \- Scalable De Novo Isoform Discovery :homepage: https://github.com/PacificBiosciences/pbbioconda :license: BSD-3-Clause-Clear :recipe: /`isoseq3 `_/`meta.yaml `_ .. conda:package:: isoseq3 |downloads_isoseq3| |docker_isoseq3| :versions: .. raw:: html
4.0.0-03.8.2-03.8.1-03.8.0-03.7.0-03.4.0-03.3.0-03.2.2-03.2.1-3 ``4.0.0-0``,  ``3.8.2-0``,  ``3.8.1-0``,  ``3.8.0-0``,  ``3.7.0-0``,  ``3.4.0-0``,  ``3.3.0-0``,  ``3.2.2-0``,  ``3.2.1-3``,  ``3.2.1-2``,  ``3.2.1-1``,  ``3.2.1-0``,  ``3.2.0-0``,  ``3.1.2-0``,  ``3.1.0-0``,  ``3.0.0-2``,  ``3.0.0-1``,  ``3.0.0-0``,  ``0.7.2-2``,  ``0.7.2-1``,  ``0.7.2-0`` .. raw:: html
:depends isoseq: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install isoseq3 and update with:: mamba update isoseq3 To create a new environment, run:: mamba create --name myenvname isoseq3 with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/isoseq3: (see `isoseq3/tags`_ for valid values for ````) .. |downloads_isoseq3| image:: https://img.shields.io/conda/dn/bioconda/isoseq3.svg?style=flat :target: https://anaconda.org/bioconda/isoseq3 :alt: (downloads) .. |docker_isoseq3| image:: https://quay.io/repository/biocontainers/isoseq3/status :target: https://quay.io/repository/biocontainers/isoseq3 .. _`isoseq3/tags`: https://quay.io/repository/biocontainers/isoseq3?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/isoseq3/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/isoseq3/README.html