:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'jasmine' .. highlight: bash jasmine ======= .. conda:recipe:: jasmine :replaces_section_title: :noindex: Jasmine\: a Java pipeline for isomiR characterization in miRNA\-Seq Data :homepage: https://bitbucket.org/bipous/jasmine/src/master :license: GPL >=3 :recipe: /`jasmine `_/`meta.yaml `_ .. conda:package:: jasmine |downloads_jasmine| |docker_jasmine| :versions: ``1.1-1``,  ``1.1-0`` :depends openjdk: ``>=8`` :depends python: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install jasmine and update with:: mamba update jasmine To create a new environment, run:: mamba create --name myenvname jasmine with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/jasmine: (see `jasmine/tags`_ for valid values for ````) .. |downloads_jasmine| image:: https://img.shields.io/conda/dn/bioconda/jasmine.svg?style=flat :target: https://anaconda.org/bioconda/jasmine :alt: (downloads) .. |docker_jasmine| image:: https://quay.io/repository/biocontainers/jasmine/status :target: https://quay.io/repository/biocontainers/jasmine .. _`jasmine/tags`: https://quay.io/repository/biocontainers/jasmine?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/jasmine/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/jasmine/README.html