:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'kaiju' .. highlight: bash kaiju ===== .. conda:recipe:: kaiju :replaces_section_title: :noindex: Fast and sensitive taxonomic classification for metagenomics :homepage: https://kaiju.binf.ku.dk/ :developer docs: https://github.com/bioinformatics-centre/kaiju :license: GPL3 / GPL-3.0-or-later :recipe: /`kaiju `_/`meta.yaml `_ :links: biotools: :biotools:`kaiju`, doi: :doi:`10.1038/ncomms11257` .. conda:package:: kaiju |downloads_kaiju| |docker_kaiju| :versions: .. raw:: html
1.10.1-01.10.0-01.9.2-31.9.2-21.9.2-11.9.2-01.9.0-11.9.0-01.8.2-1 ``1.10.1-0``,  ``1.10.0-0``,  ``1.9.2-3``,  ``1.9.2-2``,  ``1.9.2-1``,  ``1.9.2-0``,  ``1.9.0-1``,  ``1.9.0-0``,  ``1.8.2-1``,  ``1.8.2-0``,  ``1.8.1-1``,  ``1.8.1-0``,  ``1.8.0-0``,  ``1.7.4-1``,  ``1.7.4-0``,  ``1.7.3-1``,  ``1.7.3-0``,  ``1.7.2-0``,  ``1.7.1-0``,  ``1.7.0-2``,  ``1.6.3-2``,  ``1.6.3-1``,  ``1.6.3-0``,  ``1.6.2-1``,  ``1.6.2-0``,  ``1.6.1-1``,  ``1.6.1-0``,  ``1.5.0-0``,  ``1.4.5-0``,  ``1.4.4-3``,  ``1.4.4-2``,  ``1.4.4-1``,  ``1.4.4-0``,  ``1.0-0`` .. raw:: html
:depends curl: :depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :depends libzlib: ``>=1.2.13,<1.3.0a0`` :depends perl: :depends python: :depends wget: :depends zlib: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install kaiju and update with:: mamba update kaiju To create a new environment, run:: mamba create --name myenvname kaiju with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/kaiju: (see `kaiju/tags`_ for valid values for ````) .. |downloads_kaiju| image:: https://img.shields.io/conda/dn/bioconda/kaiju.svg?style=flat :target: https://anaconda.org/bioconda/kaiju :alt: (downloads) .. |docker_kaiju| image:: https://quay.io/repository/biocontainers/kaiju/status :target: https://quay.io/repository/biocontainers/kaiju .. _`kaiju/tags`: https://quay.io/repository/biocontainers/kaiju?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/kaiju/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/kaiju/README.html