:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'kinsimriboswitch' .. highlight: bash kinsimriboswitch ================ .. conda:recipe:: kinsimriboswitch :replaces_section_title: :noindex: Pipeline for the simulation of RNA\-\-ligand interaction kinetics as outlined in Kuehnl et al. 2017\, https\:\/\/doi.org\/10.1186\/s12859\-017\-1823\-5 :homepage: http://www.bioinf.uni-leipzig.de/~felix/ :license: GPLv3 :recipe: /`kinsimriboswitch `_/`meta.yaml `_ .. conda:package:: kinsimriboswitch |downloads_kinsimriboswitch| |docker_kinsimriboswitch| :versions: ``0.3-3``,  ``0.3-2``,  ``0.3-1``,  ``0.3-0`` :depends coreutils: :depends gmp: ``>=6.2.1,<7.0a0`` :depends libgcc-ng: ``>=9.3.0`` :depends libstdcxx-ng: ``>=9.3.0`` :depends perl: ``>=5.26.2,<5.26.3.0a0`` :depends perl-clone: :depends perl-devel-assert: :depends perl-file-slurp: :depends perl-heap: :depends perl-inline: :depends perl-inline-c: :depends perl-ipc-system-simple: :depends perl-list-moreutils: :depends perl-math-random-mt-auto: :depends perl-math-round: :depends perl-parallel-loops: :depends perl-parse-recdescent: :depends perl-sys-info: :depends r: :depends r-argparser: :depends r-rcolorbrewer: :depends treekin: :depends viennarna: ``>=2.4.17,<2.5.0a0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install kinsimriboswitch and update with:: mamba update kinsimriboswitch To create a new environment, run:: mamba create --name myenvname kinsimriboswitch with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/kinsimriboswitch: (see `kinsimriboswitch/tags`_ for valid values for ````) .. |downloads_kinsimriboswitch| image:: https://img.shields.io/conda/dn/bioconda/kinsimriboswitch.svg?style=flat :target: https://anaconda.org/bioconda/kinsimriboswitch :alt: (downloads) .. |docker_kinsimriboswitch| image:: https://quay.io/repository/biocontainers/kinsimriboswitch/status :target: https://quay.io/repository/biocontainers/kinsimriboswitch .. _`kinsimriboswitch/tags`: https://quay.io/repository/biocontainers/kinsimriboswitch?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/kinsimriboswitch/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/kinsimriboswitch/README.html