:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'knot-asm-analysis' .. highlight: bash knot-asm-analysis ================= .. conda:recipe:: knot-asm-analysis :replaces_section_title: :noindex: KNOT\: Knowledge Network Overlap exTraction is a tool for the investigation of fragmented long read assemblies. :homepage: https://github.com/natir/knot :license: MIT / MIT :recipe: /`knot-asm-analysis `_/`meta.yaml `_ .. conda:package:: knot-asm-analysis |downloads_knot-asm-analysis| |docker_knot-asm-analysis| :versions: ``1.3.0-0`` :depends biopython: ``>=1.72`` :depends fpa: ``>=0.5`` :depends gfapy: ``>=1.0.0`` :depends jinja2: ``>=2.10`` :depends minimap2: :depends networkx: ``>=2.2`` :depends python: ``>=3`` :depends snakemake: ``>=5.3`` :depends yacrd: ``>=0.6`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install knot-asm-analysis and update with:: mamba update knot-asm-analysis To create a new environment, run:: mamba create --name myenvname knot-asm-analysis with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/knot-asm-analysis: (see `knot-asm-analysis/tags`_ for valid values for ````) .. |downloads_knot-asm-analysis| image:: https://img.shields.io/conda/dn/bioconda/knot-asm-analysis.svg?style=flat :target: https://anaconda.org/bioconda/knot-asm-analysis :alt: (downloads) .. |docker_knot-asm-analysis| image:: https://quay.io/repository/biocontainers/knot-asm-analysis/status :target: https://quay.io/repository/biocontainers/knot-asm-analysis .. _`knot-asm-analysis/tags`: https://quay.io/repository/biocontainers/knot-asm-analysis?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/knot-asm-analysis/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/knot-asm-analysis/README.html