:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'kounta' .. highlight: bash kounta ====== .. conda:recipe:: kounta :replaces_section_title: :noindex: Generate multi\-sample k\-mer count matrix :homepage: https://github.com/tseemann/kounta :license: GPL-3.0 :recipe: /`kounta `_/`meta.yaml `_ .. conda:package:: kounta |downloads_kounta| |docker_kounta| :versions: ``0.2.3-2``,  ``0.2.3-1``,  ``0.2.3-0``,  ``0.2.0-0`` :depends coreutils: :depends kmc: ``>=3.1`` :depends parallel: :depends perl: ``>=5.26`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install kounta and update with:: mamba update kounta To create a new environment, run:: mamba create --name myenvname kounta with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/kounta: (see `kounta/tags`_ for valid values for ````) .. |downloads_kounta| image:: https://img.shields.io/conda/dn/bioconda/kounta.svg?style=flat :target: https://anaconda.org/bioconda/kounta :alt: (downloads) .. |docker_kounta| image:: https://quay.io/repository/biocontainers/kounta/status :target: https://quay.io/repository/biocontainers/kounta .. _`kounta/tags`: https://quay.io/repository/biocontainers/kounta?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/kounta/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/kounta/README.html