:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'lcfit' .. highlight: bash lcfit ===== .. conda:recipe:: lcfit :replaces_section_title: :noindex: Likelihood curve fitting by nonlinear least squares. :homepage: https://github.com/matsengrp/lcfit :license: GPL / GPL-3.0 :recipe: /`lcfit `_/`meta.yaml `_ .. conda:package:: lcfit |downloads_lcfit| |docker_lcfit| :versions: ``0.5-3``,  ``0.4-0`` :depends bpp-core: :depends bpp-phyl: :depends bpp-seq: :depends gsl: ``>=2.2.1,<2.3.0a0`` :depends libgcc-ng: ``>=4.9`` :depends libstdcxx-ng: ``>=4.9`` :depends nlopt: :depends openblas: ``>=0.2.20,<0.2.21.0a0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install lcfit and update with:: mamba update lcfit To create a new environment, run:: mamba create --name myenvname lcfit with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/lcfit: (see `lcfit/tags`_ for valid values for ````) .. |downloads_lcfit| image:: https://img.shields.io/conda/dn/bioconda/lcfit.svg?style=flat :target: https://anaconda.org/bioconda/lcfit :alt: (downloads) .. |docker_lcfit| image:: https://quay.io/repository/biocontainers/lcfit/status :target: https://quay.io/repository/biocontainers/lcfit .. _`lcfit/tags`: https://quay.io/repository/biocontainers/lcfit?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/lcfit/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/lcfit/README.html