:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'linkage2allegro' .. highlight: bash linkage2allegro =============== .. conda:recipe:: linkage2allegro :replaces_section_title: :noindex: Converts between the output linkage formats of Merlin\, Simwalk\, Genehunter\, and Swiftlink into Allegro. :homepage: https://github.com/BioTools-Tek/linkage-converter :license: GPL3 :recipe: /`linkage2allegro `_/`meta.yaml `_ .. conda:package:: linkage2allegro |downloads_linkage2allegro| |docker_linkage2allegro| :versions: ``2017.3-1``,  ``2017.3-0``,  ``2017.2-0``,  ``2017.1-0`` :depends python: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install linkage2allegro and update with:: mamba update linkage2allegro To create a new environment, run:: mamba create --name myenvname linkage2allegro with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/linkage2allegro: (see `linkage2allegro/tags`_ for valid values for ````) .. |downloads_linkage2allegro| image:: https://img.shields.io/conda/dn/bioconda/linkage2allegro.svg?style=flat :target: https://anaconda.org/bioconda/linkage2allegro :alt: (downloads) .. |docker_linkage2allegro| image:: https://quay.io/repository/biocontainers/linkage2allegro/status :target: https://quay.io/repository/biocontainers/linkage2allegro .. _`linkage2allegro/tags`: https://quay.io/repository/biocontainers/linkage2allegro?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/linkage2allegro/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/linkage2allegro/README.html