:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'longshot' .. highlight: bash longshot ======== .. conda:recipe:: longshot :replaces_section_title: :noindex: Diploid SNV caller for error\-prone reads. :homepage: https://github.com/pjedge/longshot :license: MIT / MIT :recipe: /`longshot `_/`meta.yaml `_ :links: doi: :doi:`10.1038/s41467-019-12493-y`, biotools: :biotools:`longshot` .. conda:package:: longshot |downloads_longshot| |docker_longshot| :versions: .. raw:: html
1.0.0-00.4.5-20.4.5-10.4.5-00.4.1-20.4.1-10.4.1-00.4.0-00.3.5-0 ``1.0.0-0``,  ``0.4.5-2``,  ``0.4.5-1``,  ``0.4.5-0``,  ``0.4.1-2``,  ``0.4.1-1``,  ``0.4.1-0``,  ``0.4.0-0``,  ``0.3.5-0``,  ``v0.3.5-0``,  ``v0.3.4-0``,  ``v0.3.3-0``,  ``v0.3.2-0`` .. raw:: html
:depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :depends libzlib: ``>=1.2.13,<1.3.0a0`` :depends xz: ``>=5.2.6,<6.0a0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install longshot and update with:: mamba update longshot To create a new environment, run:: mamba create --name myenvname longshot with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/longshot: (see `longshot/tags`_ for valid values for ````) .. |downloads_longshot| image:: https://img.shields.io/conda/dn/bioconda/longshot.svg?style=flat :target: https://anaconda.org/bioconda/longshot :alt: (downloads) .. |docker_longshot| image:: https://quay.io/repository/biocontainers/longshot/status :target: https://quay.io/repository/biocontainers/longshot .. _`longshot/tags`: https://quay.io/repository/biocontainers/longshot?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/longshot/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/longshot/README.html