:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'lrphase' .. highlight: bash lrphase ======= .. conda:recipe:: lrphase :replaces_section_title: :noindex: Phasing individual long reads using known haplotype information. :homepage: https://github.com/Boyle-Lab/LRphase.git :license: MIT / MIT :recipe: /`lrphase `_/`meta.yaml `_ .. conda:package:: lrphase |downloads_lrphase| |docker_lrphase| :versions: ``1.1.2-0``,  ``1.1.0-0``,  ``1.0.0-0``,  ``0.7.13-0``,  ``0.7.12-0``,  ``0.7.10-0``,  ``0.7.6-0``,  ``0.7.5-0`` :depends biopython: ``>=1.78`` :depends numpy: ``>=1.20.1`` :depends powerlaw: ``>=1.4.6`` :depends pyliftover: ``>=0.4`` :depends pysam: ``>=0.16.0.1`` :depends python: ``>=3.7`` :depends requests: ``>=2.26.0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install lrphase and update with:: mamba update lrphase To create a new environment, run:: mamba create --name myenvname lrphase with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/lrphase: (see `lrphase/tags`_ for valid values for ````) .. |downloads_lrphase| image:: https://img.shields.io/conda/dn/bioconda/lrphase.svg?style=flat :target: https://anaconda.org/bioconda/lrphase :alt: (downloads) .. |docker_lrphase| image:: https://quay.io/repository/biocontainers/lrphase/status :target: https://quay.io/repository/biocontainers/lrphase .. _`lrphase/tags`: https://quay.io/repository/biocontainers/lrphase?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/lrphase/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/lrphase/README.html