:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'mageck-vispr' .. highlight: bash mageck-vispr ============ .. conda:recipe:: mageck-vispr :replaces_section_title: :noindex: MAGeCK\-VISPR is a comprehensive quality control\, analysis and visualization workflow for CRISPR\/Cas9 screens based on MAGeCK\, VISPR\, Snakemake\, FastQC and cutadapt. :homepage: https://bitbucket.org/liulab/mageck-vispr :license: MIT License :recipe: /`mageck-vispr `_/`meta.yaml `_ .. conda:package:: mageck-vispr |downloads_mageck-vispr| |docker_mageck-vispr| :versions: .. raw:: html
0.5.6-00.5.5-00.5.4-30.5.4-20.5.4-10.5.4-00.5.3-00.5.2-00.4.7-0 ``0.5.6-0``,  ``0.5.5-0``,  ``0.5.4-3``,  ``0.5.4-2``,  ``0.5.4-1``,  ``0.5.4-0``,  ``0.5.3-0``,  ``0.5.2-0``,  ``0.4.7-0``,  ``0.4.6-0``,  ``0.4.5-0`` .. raw:: html
:depends cutadapt: :depends fastqc: :depends jinja2: :depends mageck: ``>=0.5.9`` :depends python: ``>=3`` :depends snakemake: :depends vispr: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install mageck-vispr and update with:: mamba update mageck-vispr To create a new environment, run:: mamba create --name myenvname mageck-vispr with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/mageck-vispr: (see `mageck-vispr/tags`_ for valid values for ````) .. |downloads_mageck-vispr| image:: https://img.shields.io/conda/dn/bioconda/mageck-vispr.svg?style=flat :target: https://anaconda.org/bioconda/mageck-vispr :alt: (downloads) .. |docker_mageck-vispr| image:: https://quay.io/repository/biocontainers/mageck-vispr/status :target: https://quay.io/repository/biocontainers/mageck-vispr .. _`mageck-vispr/tags`: https://quay.io/repository/biocontainers/mageck-vispr?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/mageck-vispr/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/mageck-vispr/README.html