:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'makehub' .. highlight: bash makehub ======= .. conda:recipe:: makehub :replaces_section_title: :noindex: MakeHub is a command line tool for the fully automatic generation of of track data hubs for visualizing genomes with the UCSC genome browser. :homepage: https://github.com/Gaius-Augustus/MakeHub :license: GPL / GPL-3.0 :recipe: /`makehub `_/`meta.yaml `_ .. conda:package:: makehub |downloads_makehub| |docker_makehub| :versions: ``1.0.8-0``,  ``1.0.7-0``,  ``1.0.6-0``,  ``1.0.5-1``,  ``1.0.5-0``,  ``1.0.4-0``,  ``1.0.3-0`` :depends augustus: ``>=3.5.0`` :depends biopython: :depends python: ``>=3.8`` :depends samtools: :depends ucsc-bedtobigbed: :depends ucsc-fatotwobit: :depends ucsc-genepredcheck: :depends ucsc-genepredtobed: :depends ucsc-genepredtobiggenepred: :depends ucsc-gtftogenepred: :depends ucsc-hggcpercent: :depends ucsc-ixixx: :depends ucsc-twobitinfo: :depends ucsc-wigtobigwig: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install makehub and update with:: mamba update makehub To create a new environment, run:: mamba create --name myenvname makehub with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/makehub: (see `makehub/tags`_ for valid values for ````) .. |downloads_makehub| image:: https://img.shields.io/conda/dn/bioconda/makehub.svg?style=flat :target: https://anaconda.org/bioconda/makehub :alt: (downloads) .. |docker_makehub| image:: https://quay.io/repository/biocontainers/makehub/status :target: https://quay.io/repository/biocontainers/makehub .. _`makehub/tags`: https://quay.io/repository/biocontainers/makehub?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/makehub/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/makehub/README.html