:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'mamotif' .. highlight: bash mamotif ======= .. conda:recipe:: mamotif :replaces_section_title: :noindex: An integrative toolkit for detecting cell type\-specific regulators :homepage: https://github.com/shao-lab/MAmotif :license: BSD / BSD License :recipe: /`mamotif `_/`meta.yaml `_ .. conda:package:: mamotif |downloads_mamotif| |docker_mamotif| :versions: ``1.1.0-0``,  ``1.0.1-1``,  ``1.0.1-0``,  ``1.0-1``,  ``1.0-0`` :depends manorm: ``>=1.3.0`` :depends motifscan: ``>=1.2.1`` :depends numpy: ``>=1.15`` :depends python: ``>=3.6`` :depends scipy: ``>=1.0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install mamotif and update with:: mamba update mamotif To create a new environment, run:: mamba create --name myenvname mamotif with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/mamotif: (see `mamotif/tags`_ for valid values for ````) .. |downloads_mamotif| image:: https://img.shields.io/conda/dn/bioconda/mamotif.svg?style=flat :target: https://anaconda.org/bioconda/mamotif :alt: (downloads) .. |docker_mamotif| image:: https://quay.io/repository/biocontainers/mamotif/status :target: https://quay.io/repository/biocontainers/mamotif .. _`mamotif/tags`: https://quay.io/repository/biocontainers/mamotif?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/mamotif/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/mamotif/README.html