:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'mash' .. highlight: bash mash ==== .. conda:recipe:: mash :replaces_section_title: :noindex: Fast sequence distance estimator that uses MinHash :homepage: https://github.com/marbl/Mash :license: https://github.com/marbl/Mash/blob/master/LICENSE.txt :recipe: /`mash `_/`meta.yaml `_ .. conda:package:: mash |downloads_mash| |docker_mash| :versions: .. raw:: html
2.3-62.3-52.3-42.3-32.3-22.3-12.3-02.2.2-22.2.2-1 ``2.3-6``,  ``2.3-5``,  ``2.3-4``,  ``2.3-3``,  ``2.3-2``,  ``2.3-1``,  ``2.3-0``,  ``2.2.2-2``,  ``2.2.2-1``,  ``2.2.2-0``,  ``2.2.1-1``,  ``2.2.1-0``,  ``2.2-0``,  ``2.1.1-0``,  ``2.1-1``,  ``2.1-0``,  ``2.0-3``,  ``2.0-2``,  ``2.0-1``,  ``2.0-0``,  ``1.1-0``,  ``1.0.2-2``,  ``1.0.2-1`` .. raw:: html
:depends capnproto: ``>=0.10.2,<0.10.3.0a0`` :depends gsl: ``>=2.7,<2.8.0a0`` :depends libcblas: ``>=3.9.0,<4.0a0`` :depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :depends libzlib: ``>=1.2.13,<1.3.0a0`` :depends zlib: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install mash and update with:: mamba update mash To create a new environment, run:: mamba create --name myenvname mash with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/mash: (see `mash/tags`_ for valid values for ````) .. |downloads_mash| image:: https://img.shields.io/conda/dn/bioconda/mash.svg?style=flat :target: https://anaconda.org/bioconda/mash :alt: (downloads) .. |docker_mash| image:: https://quay.io/repository/biocontainers/mash/status :target: https://quay.io/repository/biocontainers/mash .. _`mash/tags`: https://quay.io/repository/biocontainers/mash?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/mash/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/mash/README.html