:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'meme' .. highlight: bash meme ==== .. conda:recipe:: meme :replaces_section_title: :noindex: Motif\-based sequence analysis tools :homepage: https://meme-suite.org :license: Custom :recipe: /`meme `_/`meta.yaml `_ :links: biotools: :biotools:`meme_suite`, usegalaxy-eu: :usegalaxy-eu:`meme_dreme` .. conda:package:: meme |downloads_meme| |docker_meme| :versions: .. raw:: html
5.5.5-05.5.4-05.5.3-05.5.2-15.5.2-05.4.1-25.4.1-15.4.1-05.3.0-2 ``5.5.5-0``,  ``5.5.4-0``,  ``5.5.3-0``,  ``5.5.2-1``,  ``5.5.2-0``,  ``5.4.1-2``,  ``5.4.1-1``,  ``5.4.1-0``,  ``5.3.0-2``,  ``5.3.0-0``,  ``5.1.1-3``,  ``5.1.1-2``,  ``5.1.1-1``,  ``5.1.1-0``,  ``5.1.0-0``,  ``5.0.5-0``,  ``5.0.2-5``,  ``5.0.2-3``,  ``5.0.2-2``,  ``4.12.0-2``,  ``4.12.0-1``,  ``4.12.0-0``,  ``4.11.2-8``,  ``4.11.2-6``,  ``4.11.2-5``,  ``4.11.2-4``,  ``4.11.2-3``,  ``4.11.2-2``,  ``4.11.2-1``,  ``4.11.2-0``,  ``4.11.1-7``,  ``4.11.1-6``,  ``4.11.1-5``,  ``4.11.1-4``,  ``4.11.1-3``,  ``4.11.1-2``,  ``4.11.1-1``,  ``4.11.1-0``,  ``4.8.1-3``,  ``4.8.1-2``,  ``4.8.1-1`` .. raw:: html
:depends icu: ``>=72.1,<73.0a0`` :depends libexpat: ``>=2.5.0,<3.0a0`` :depends libgcc-ng: ``>=12`` :depends libxml2: ``>=2.11.5,<2.12.0a0`` :depends libxslt: ``>=1.1.37,<2.0a0`` :depends libzlib: ``>=1.2.13,<1.3.0a0`` :depends nodejs: ``>=20.5.1,<21.0a0`` :depends openmpi: ``>=4.1.6,<5.0a0`` :depends perl: ``>=5.32.1,<5.33.0a0 *_perl5`` :depends perl-app-cpanminus: :depends perl-cgi: :depends perl-file-which: :depends perl-html-parser: :depends perl-html-template: :depends perl-html-tree: :depends perl-json: :depends perl-log-log4perl: :depends perl-math-cdf: :depends perl-module-build: :depends perl-sys-info: :depends perl-xml-parser: :depends perl-xml-simple: :depends perl-yaml: :depends python: ``>=3.7`` :depends xz: ``>=5.2.6,<6.0a0`` :depends yaml: ``>=0.2.5,<0.3.0a0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install meme and update with:: mamba update meme To create a new environment, run:: mamba create --name myenvname meme with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/meme: (see `meme/tags`_ for valid values for ````) .. |downloads_meme| image:: https://img.shields.io/conda/dn/bioconda/meme.svg?style=flat :target: https://anaconda.org/bioconda/meme :alt: (downloads) .. |docker_meme| image:: https://quay.io/repository/biocontainers/meme/status :target: https://quay.io/repository/biocontainers/meme .. _`meme/tags`: https://quay.io/repository/biocontainers/meme?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/meme/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/meme/README.html