:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'metaquantome' .. highlight: bash metaquantome ============ .. conda:recipe:: metaquantome :replaces_section_title: :noindex: Quantitative metaproteomics analysis of taxonomy and function. :homepage: https://github.com/galaxyproteomics/metaquantome :license: APACHE / Apache Software License :recipe: /`metaquantome `_/`meta.yaml `_ .. conda:package:: metaquantome |downloads_metaquantome| |docker_metaquantome| :versions: .. raw:: html
2.0.2-02.0.1-02.0.0-12.0.0-01.1.0-11.1.0-01.0.0-01.0a0-30.99.5-3 ``2.0.2-0``,  ``2.0.1-0``,  ``2.0.0-1``,  ``2.0.0-0``,  ``1.1.0-1``,  ``1.1.0-0``,  ``1.0.0-0``,  ``1.0a0-3``,  ``0.99.5-3``,  ``0.99.4a0-3``,  ``0.99.3-3``,  ``0.99.3-2``,  ``0.99.2-2``,  ``0.99.2-0`` .. raw:: html
:depends biopython: ``1.73.*`` :depends ete3: ``3.1.2.*`` :depends goatools: ``0.7.*`` :depends libiconv: ``1.15.*`` :depends numpy: ``1.15.*`` :depends pandas: ``0.23.*`` :depends python: ``>=3`` :depends r-base: ``3.5.1.*`` :depends r-dplyr: ``0.8.*`` :depends r-ggplot2: ``3.0.*`` :depends r-gplots: ``3.0.*`` :depends r-jsonlite: ``1.5.*`` :depends r-scico: ``1.1.0.*`` :depends r-tidyr: ``0.8.*`` :depends statsmodels: ``0.8.*`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install metaquantome and update with:: mamba update metaquantome To create a new environment, run:: mamba create --name myenvname metaquantome with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/metaquantome: (see `metaquantome/tags`_ for valid values for ````) .. |downloads_metaquantome| image:: https://img.shields.io/conda/dn/bioconda/metaquantome.svg?style=flat :target: https://anaconda.org/bioconda/metaquantome :alt: (downloads) .. |docker_metaquantome| image:: https://quay.io/repository/biocontainers/metaquantome/status :target: https://quay.io/repository/biocontainers/metaquantome .. _`metaquantome/tags`: https://quay.io/repository/biocontainers/metaquantome?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/metaquantome/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/metaquantome/README.html