:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'mimodd' .. highlight: bash mimodd ====== .. conda:recipe:: mimodd :replaces_section_title: :noindex: Tools for Mutation Identification in Model Organism Genomes :homepage: http://sourceforge.net/projects/mimodd :license: GPL3 :recipe: /`mimodd `_/`meta.yaml `_ :links: usegalaxy-eu: :usegalaxy-eu:`mimodd_align` .. conda:package:: mimodd |downloads_mimodd| |docker_mimodd| :versions: ``0.1.9-0``,  ``0.1.8-0``,  ``0.1.7.3-0`` :depends libgcc: :depends python: ``3.5*`` :depends rpy2: :depends zlib: ``1.2.11*`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install mimodd and update with:: mamba update mimodd To create a new environment, run:: mamba create --name myenvname mimodd with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/mimodd: (see `mimodd/tags`_ for valid values for ````) .. |downloads_mimodd| image:: https://img.shields.io/conda/dn/bioconda/mimodd.svg?style=flat :target: https://anaconda.org/bioconda/mimodd :alt: (downloads) .. |docker_mimodd| image:: https://quay.io/repository/biocontainers/mimodd/status :target: https://quay.io/repository/biocontainers/mimodd .. _`mimodd/tags`: https://quay.io/repository/biocontainers/mimodd?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/mimodd/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/mimodd/README.html