:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'minimap' .. highlight: bash minimap ======= .. conda:recipe:: minimap :replaces_section_title: :noindex: Experimental tool to find approximate mapping positions between long sequences :homepage: https://github.com/lh3/minimap :license: MIT :recipe: /`minimap `_/`meta.yaml `_ .. conda:package:: minimap |downloads_minimap| |docker_minimap| :versions: ``0.2-0``,  ``0.2_r124-7``,  ``0.2_r124-6``,  ``0.2_r124-5``,  ``0.2_r124-4``,  ``0.2_r124-3``,  ``0.2_r124-2``,  ``0.2_r124-1``,  ``0.2_r124-0`` :depends libgcc: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install minimap and update with:: mamba update minimap To create a new environment, run:: mamba create --name myenvname minimap with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/minimap: (see `minimap/tags`_ for valid values for ````) .. |downloads_minimap| image:: https://img.shields.io/conda/dn/bioconda/minimap.svg?style=flat :target: https://anaconda.org/bioconda/minimap :alt: (downloads) .. |docker_minimap| image:: https://quay.io/repository/biocontainers/minimap/status :target: https://quay.io/repository/biocontainers/minimap .. _`minimap/tags`: https://quay.io/repository/biocontainers/minimap?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/minimap/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/minimap/README.html