:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'mirdeep-p2' .. highlight: bash mirdeep-p2 ========== .. conda:recipe:: mirdeep-p2 :replaces_section_title: :noindex: A fast and accurate tool for analyzing the miRNA transcriptome in plants :homepage: https://sourceforge.net/projects/mirdp2/ :license: GNU General Public v3 (GPLv3) :recipe: /`mirdeep-p2 `_/`meta.yaml `_ .. conda:package:: mirdeep-p2 |downloads_mirdeep-p2| |docker_mirdeep-p2| :versions: ``1.1.4-0`` :depends bowtie: :depends bowtie2: :depends perl: :depends randfold: :depends viennarna: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install mirdeep-p2 and update with:: mamba update mirdeep-p2 To create a new environment, run:: mamba create --name myenvname mirdeep-p2 with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/mirdeep-p2: (see `mirdeep-p2/tags`_ for valid values for ````) .. |downloads_mirdeep-p2| image:: https://img.shields.io/conda/dn/bioconda/mirdeep-p2.svg?style=flat :target: https://anaconda.org/bioconda/mirdeep-p2 :alt: (downloads) .. |docker_mirdeep-p2| image:: https://quay.io/repository/biocontainers/mirdeep-p2/status :target: https://quay.io/repository/biocontainers/mirdeep-p2 .. _`mirdeep-p2/tags`: https://quay.io/repository/biocontainers/mirdeep-p2?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/mirdeep-p2/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/mirdeep-p2/README.html