:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'mirfix'
.. highlight: bash

mirfix
======

.. conda:recipe:: mirfix
   :replaces_section_title:
   :noindex:

   MIRfix automatically curates miRNA datasets by improving alignments of their precursors\, the consistency of the annotation of mature miR and miR\* sequence\, and the phylogenetic coverage. MIRfix produces alignments that are comparable across families and sets the stage for improved homology search as well as quantitative analyses.

   :homepage: https://github.com/Bierinformatik/MIRfix
   :license: GPL / GPL-3.0
   :recipe: /`mirfix <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/mirfix>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/mirfix/meta.yaml>`_

   


.. conda:package:: mirfix

   |downloads_mirfix| |docker_mirfix|

   :versions:
      
      

      ``2.1.1-0``,  ``2.1.0-1``,  ``2.1.0-0``,  ``2.0.1-0``,  ``2.0.0-1``,  ``2.0.0-0``,  ``1.0.1-0``

      

   
   :depends biopython: ``>=1.78``
   :depends blast: ``>=2.13.0``
   :depends clustalw: ``>=2.1``
   :depends dialign2: ``>=2.2.1``
   :depends matplotlib-base: ``>=3.3.1``
   :depends natsort: ``>=6.2.0``
   :depends numpy: ``>=1.19.1``
   :depends pyfaidx: ``>=0.7.1``
   :depends python: ``>=3``
   :depends tk: ``>=8.6.10``
   :depends viennarna: ``>=2.4.15``
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install mirfix

   and update with::

      mamba update mirfix

  To create a new environment, run::

      mamba create --name myenvname mirfix

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/mirfix:<tag>

   (see `mirfix/tags`_ for valid values for ``<tag>``)


.. |downloads_mirfix| image:: https://img.shields.io/conda/dn/bioconda/mirfix.svg?style=flat
   :target: https://anaconda.org/bioconda/mirfix
   :alt:   (downloads)
.. |docker_mirfix| image:: https://quay.io/repository/biocontainers/mirfix/status
   :target: https://quay.io/repository/biocontainers/mirfix
.. _`mirfix/tags`: https://quay.io/repository/biocontainers/mirfix?tab=tags


.. raw:: html

    <script>
        var package = "mirfix";
        var versions = ["2.1.1","2.1.0","2.1.0","2.0.1","2.0.0"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

Link to this page
-----------------

Render an |install-with-bioconda| badge with the following MarkDown::

   [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/mirfix/README.html)

.. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat
   :target: http://bioconda.github.io/recipes/mirfix/README.html