:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'moabs' .. highlight: bash moabs ===== .. conda:recipe:: moabs :replaces_section_title: :noindex: Methylation analysis on Bisulfite\-Sequencing reads :homepage: https://github.com/sunnyisgalaxy/moabs :license: MIT :recipe: /`moabs `_/`meta.yaml `_ :links: doi: :doi:`10.1021/acs.jproteome.8b00708`, usegalaxy-eu: :usegalaxy-eu:`moabs` .. conda:package:: moabs |downloads_moabs| |docker_moabs| :versions: .. raw:: html
1.3.9.6-61.3.9.6-51.3.9.6-41.3.9.6-31.3.9.6-21.3.9.6-11.3.9.6-01.3.9.5-01.3.9.4-0 ``1.3.9.6-6``,  ``1.3.9.6-5``,  ``1.3.9.6-4``,  ``1.3.9.6-3``,  ``1.3.9.6-2``,  ``1.3.9.6-1``,  ``1.3.9.6-0``,  ``1.3.9.5-0``,  ``1.3.9.4-0``,  ``1.3.9.3-0``,  ``1.3.9.2-0``,  ``1.3.9.0-0``,  ``1.3.8.9-0``,  ``1.3.8.8-0``,  ``1.3.8.7-0``,  ``1.3.8.6-1``,  ``1.3.8.6-0``,  ``1.3.8.5-0``,  ``1.3.8.4-2``,  ``1.3.8.4-1``,  ``1.3.8.4-0``,  ``1.3.8.2-0``,  ``1.3.8.1-1``,  ``1.3.8.1-0``,  ``1.3.7.9-1``,  ``1.3.7.9-0``,  ``1.3.7.8-0``,  ``1.3.7.7-0``,  ``1.3.7.6-0``,  ``1.3.7.5-0``,  ``1.3.4.6-0``,  ``1.3.4.5-1``,  ``1.3.4.5-0``,  ``1.3.4-0`` .. raw:: html
:depends boost-cpp: ``>=1.78.0,<1.78.1.0a0`` :depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :depends libzlib: ``>=1.2.13,<1.3.0a0`` :depends ncurses: ``>=6.3,<7.0a0`` :depends perl: ``>=5.32.1,<5.33.0a0 *_perl5`` :depends perl-config-simple: :depends r-base: ``>=4.2,<4.3.0a0`` :depends r-ggplot2: :depends r-gridextra: :depends wget: :depends zlib: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install moabs and update with:: mamba update moabs To create a new environment, run:: mamba create --name myenvname moabs with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/moabs: (see `moabs/tags`_ for valid values for ````) .. |downloads_moabs| image:: https://img.shields.io/conda/dn/bioconda/moabs.svg?style=flat :target: https://anaconda.org/bioconda/moabs :alt: (downloads) .. |docker_moabs| image:: https://quay.io/repository/biocontainers/moabs/status :target: https://quay.io/repository/biocontainers/moabs .. _`moabs/tags`: https://quay.io/repository/biocontainers/moabs?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/moabs/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/moabs/README.html