:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'msproteomicstools' .. highlight: bash msproteomicstools ================= .. conda:recipe:: msproteomicstools :replaces_section_title: :noindex: msproteomicstools is a Python library that can be used in LC\-MS\/MS based proteomics. It features a core library called. :homepage: https://github.com/msproteomicstools/msproteomicstools :license: BSD / BSD :recipe: /`msproteomicstools `_/`meta.yaml `_ .. conda:package:: msproteomicstools |downloads_msproteomicstools| |docker_msproteomicstools| :versions: ``0.11.0-4``,  ``0.11.0-3``,  ``0.11.0-2``,  ``0.11.0-1``,  ``0.11.0-0``,  ``0.8.0-1``,  ``0.8.0-0``,  ``0.5.0-1``,  ``0.5.0-0`` :depends biopython: :depends configobj: :depends libgcc-ng: ``>=10.3.0`` :depends libstdcxx-ng: ``>=10.3.0`` :depends lxml: :depends numpy: ``>=1.16.5,<2.0a0`` :depends pymzml: ``0.7.8`` :depends pyteomics: ``>=2.4.0`` :depends python: ``>=2.7,<2.8.0a0`` :depends python-cluster: ``1.3.3`` :depends python_abi: ``2.7.* *_cp27mu`` :depends scikits-datasmooth: :depends scipy: :depends statsmodels: :depends xlsxwriter: ``>=0.5.3`` :depends xlwt: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install msproteomicstools and update with:: mamba update msproteomicstools To create a new environment, run:: mamba create --name myenvname msproteomicstools with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/msproteomicstools: (see `msproteomicstools/tags`_ for valid values for ````) .. |downloads_msproteomicstools| image:: https://img.shields.io/conda/dn/bioconda/msproteomicstools.svg?style=flat :target: https://anaconda.org/bioconda/msproteomicstools :alt: (downloads) .. |docker_msproteomicstools| image:: https://quay.io/repository/biocontainers/msproteomicstools/status :target: https://quay.io/repository/biocontainers/msproteomicstools .. _`msproteomicstools/tags`: https://quay.io/repository/biocontainers/msproteomicstools?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/msproteomicstools/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/msproteomicstools/README.html