:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'muscle' .. highlight: bash muscle ====== .. conda:recipe:: muscle :replaces_section_title: :noindex: MUSCLE\: multiple sequence alignment with high accuracy and high throughput :homepage: https://github.com/rcedgar/muscle :license: GPL-3.0-only :recipe: /`muscle `_/`meta.yaml `_ :links: biotools: :biotools:`muscle` .. conda:package:: muscle |downloads_muscle| |docker_muscle| :versions: .. raw:: html
5.1-35.1-25.1-15.1-05.1.0-03.8.1551-63.8.1551-53.8.1551-43.8.1551-3 ``5.1-3``,  ``5.1-2``,  ``5.1-1``,  ``5.1-0``,  ``5.1.0-0``,  ``3.8.1551-6``,  ``3.8.1551-5``,  ``3.8.1551-4``,  ``3.8.1551-3``,  ``3.8.1551-2``,  ``3.8.1551-1``,  ``3.8.31-0`` .. raw:: html
:depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install muscle and update with:: mamba update muscle To create a new environment, run:: mamba create --name myenvname muscle with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/muscle: (see `muscle/tags`_ for valid values for ````) .. |downloads_muscle| image:: https://img.shields.io/conda/dn/bioconda/muscle.svg?style=flat :target: https://anaconda.org/bioconda/muscle :alt: (downloads) .. |docker_muscle| image:: https://quay.io/repository/biocontainers/muscle/status :target: https://quay.io/repository/biocontainers/muscle .. _`muscle/tags`: https://quay.io/repository/biocontainers/muscle?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/muscle/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/muscle/README.html