:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'music-deconvolution' .. highlight: bash music-deconvolution =================== .. conda:recipe:: music-deconvolution :replaces_section_title: :noindex: Multi\-subject single cell deconvolution :homepage: https://github.com/xuranw/MuSiC :license: GPL (>= 3) :recipe: /`music-deconvolution `_/`meta.yaml `_ Companion package to \"A bulk tissue deconvolution method with multi\-subject single cell expression reference.\" This package providase functions to estimate bulk tissue cell type proportions with multi\-subject single cell expression as reference. .. conda:package:: music-deconvolution |downloads_music-deconvolution| |docker_music-deconvolution| :versions: ``0.1.1-0`` :depends bioconductor-biobase: :depends r-base: ``>=3.5.1,<3.5.2.0a0`` :depends r-ggplot2: :depends r-mcmcpack: :depends r-nnls: :depends r-plyr: :depends xbioc: :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install music-deconvolution and update with:: conda update music-deconvolution or use the docker container:: docker pull quay.io/biocontainers/music-deconvolution: (see `music-deconvolution/tags`_ for valid values for ````) .. |downloads_music-deconvolution| image:: https://img.shields.io/conda/dn/bioconda/music-deconvolution.svg?style=flat :target: https://anaconda.org/bioconda/music-deconvolution :alt: (downloads) .. |docker_music-deconvolution| image:: https://quay.io/repository/biocontainers/music-deconvolution/status :target: https://quay.io/repository/biocontainers/music-deconvolution .. _`music-deconvolution/tags`: https://quay.io/repository/biocontainers/music-deconvolution?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/music-deconvolution/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/music-deconvolution/README.html