:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'mvicuna' .. highlight: bash mvicuna ======= .. conda:recipe:: mvicuna :replaces_section_title: :noindex: M\-Vicuna is a modularized version of VICUNA\, a de novo assembly program targeting populations with high mutation rates :homepage: https://www.broadinstitute.org/scientific-community/science/projects/viral-genomics/vicuna :license: https://www.broadinstitute.org/node/4238 :recipe: /`mvicuna `_/`meta.yaml `_ .. conda:package:: mvicuna |downloads_mvicuna| |docker_mvicuna| :versions: ``1.0-10``,  ``1.0-9``,  ``1.0-8``,  ``1.0-7``,  ``1.0-6``,  ``1.0-5``,  ``1.0-4``,  ``1.0-1`` :depends _openmp_mutex: ``>=4.5`` :depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install mvicuna and update with:: mamba update mvicuna To create a new environment, run:: mamba create --name myenvname mvicuna with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/mvicuna: (see `mvicuna/tags`_ for valid values for ````) .. |downloads_mvicuna| image:: https://img.shields.io/conda/dn/bioconda/mvicuna.svg?style=flat :target: https://anaconda.org/bioconda/mvicuna :alt: (downloads) .. |docker_mvicuna| image:: https://quay.io/repository/biocontainers/mvicuna/status :target: https://quay.io/repository/biocontainers/mvicuna .. _`mvicuna/tags`: https://quay.io/repository/biocontainers/mvicuna?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/mvicuna/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/mvicuna/README.html