:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'nanocomp' .. highlight: bash nanocomp ======== .. conda:recipe:: nanocomp :replaces_section_title: :noindex: Comparing runs of Oxford Nanopore sequencing data and alignments :homepage: https://github.com/wdecoster/NanoComp :license: MIT / MIT :recipe: /`nanocomp `_/`meta.yaml `_ .. conda:package:: nanocomp |downloads_nanocomp| |docker_nanocomp| :versions: .. raw:: html
1.23.1-01.22.0-01.21.2-01.21.0-01.20.0-01.19.3-01.19.1-01.19.0-01.18.0-0 ``1.23.1-0``,  ``1.22.0-0``,  ``1.21.2-0``,  ``1.21.0-0``,  ``1.20.0-0``,  ``1.19.3-0``,  ``1.19.1-0``,  ``1.19.0-0``,  ``1.18.0-0``,  ``1.17.0-0``,  ``1.16.1-0``,  ``1.16.0-0``,  ``1.15.1-0``,  ``1.15.0-0``,  ``1.14.1-0``,  ``1.13.1-0``,  ``1.13.0-0``,  ``1.12.0-0``,  ``1.11.3-0``,  ``1.11.2-0``,  ``1.10.1-0``,  ``1.10.0-0``,  ``1.9.2-1``,  ``1.9.2-0``,  ``1.9.1-0``,  ``1.9.0-0``,  ``1.8.0-0``,  ``1.7.0-0``,  ``1.6.0-0``,  ``1.1.0-1``,  ``1.1.0-0``,  ``1.0.0-0``,  ``0.23.1-0``,  ``0.23.0-1``,  ``0.19.0-1``,  ``0.19.0-0``,  ``0.16.0-0``,  ``0.15.0-0``,  ``0.12.4-0``,  ``0.7.0-0``,  ``0.5.0-0`` .. raw:: html
:depends nanoget: ``>=1.19.0`` :depends nanomath: ``>=1.0.0`` :depends nanoplot: ``>=1.39.0`` :depends numpy: ``>=1.16.5`` :depends pandas: :depends plotly: ``>=3.4.2`` :depends psutil: :depends pyarrow: :depends python: ``>=3`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install nanocomp and update with:: mamba update nanocomp To create a new environment, run:: mamba create --name myenvname nanocomp with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/nanocomp: (see `nanocomp/tags`_ for valid values for ````) .. |downloads_nanocomp| image:: https://img.shields.io/conda/dn/bioconda/nanocomp.svg?style=flat :target: https://anaconda.org/bioconda/nanocomp :alt: (downloads) .. |docker_nanocomp| image:: https://quay.io/repository/biocontainers/nanocomp/status :target: https://quay.io/repository/biocontainers/nanocomp .. _`nanocomp/tags`: https://quay.io/repository/biocontainers/nanocomp?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/nanocomp/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/nanocomp/README.html