:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'nanoplotter' .. highlight: bash nanoplotter =========== .. conda:recipe:: nanoplotter :replaces_section_title: :noindex: Plotting functions of Oxford Nanopore sequencing data for NanoPack :homepage: https://github.com/wdecoster/nanoplotter :license: GPL / GPL-3.0 :recipe: /`nanoplotter `_/`meta.yaml `_ .. conda:package:: nanoplotter |downloads_nanoplotter| |docker_nanoplotter| :versions: .. raw:: html
1.10.0-11.10.0-01.9.1-01.9.0-01.8.1-01.8.0-11.8.0-01.6.1-01.2.1-1 ``1.10.0-1``,  ``1.10.0-0``,  ``1.9.1-0``,  ``1.9.0-0``,  ``1.8.1-0``,  ``1.8.0-1``,  ``1.8.0-0``,  ``1.6.1-0``,  ``1.2.1-1``,  ``1.2.1-0``,  ``1.1.1-0``,  ``1.0.0-2``,  ``0.39.1-2``,  ``0.39.1-0``,  ``0.38.0-0``,  ``0.35.4-0``,  ``0.35.3-0``,  ``0.29.0-0``,  ``0.24.1-0``,  ``0.22.1-0``,  ``0.13.3-0``,  ``0.13.2-0`` .. raw:: html
:depends joypy: :depends matplotlib: ``>=2.1.0`` :depends numpy: :depends pandas: :depends pauvre: ``0.1.86`` :depends plotly: ``>=3.4.2`` :depends python: ``>3`` :depends scipy: :depends seaborn: ``>=0.9.0`` :depends statsmodels: ``>=0.8.0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install nanoplotter and update with:: mamba update nanoplotter To create a new environment, run:: mamba create --name myenvname nanoplotter with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/nanoplotter: (see `nanoplotter/tags`_ for valid values for ````) .. |downloads_nanoplotter| image:: https://img.shields.io/conda/dn/bioconda/nanoplotter.svg?style=flat :target: https://anaconda.org/bioconda/nanoplotter :alt: (downloads) .. |docker_nanoplotter| image:: https://quay.io/repository/biocontainers/nanoplotter/status :target: https://quay.io/repository/biocontainers/nanoplotter .. _`nanoplotter/tags`: https://quay.io/repository/biocontainers/nanoplotter?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/nanoplotter/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/nanoplotter/README.html