:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'nextflow' .. highlight: bash nextflow ======== .. conda:recipe:: nextflow :replaces_section_title: :noindex: A DSL for data\-driven computational pipelines http\:\/\/nextflow.io :homepage: https://github.com/nextflow-io/nextflow :license: Apache-2.0 :recipe: /`nextflow `_/`meta.yaml `_ .. conda:package:: nextflow |downloads_nextflow| |docker_nextflow| :versions: .. raw:: html
23.10.1-023.10.0-023.04.4-023.04.3-023.04.1-323.04.1-223.04.1-123.04.1-022.10.6-0 ``23.10.1-0``,  ``23.10.0-0``,  ``23.04.4-0``,  ``23.04.3-0``,  ``23.04.1-3``,  ``23.04.1-2``,  ``23.04.1-1``,  ``23.04.1-0``,  ``22.10.6-0``,  ``22.10.4-0``,  ``22.10.1-0``,  ``22.10.0-0``,  ``22.04.5-0``,  ``22.04.0-0``,  ``21.10.6-0``,  ``21.10.0-0``,  ``21.04.0-0``,  ``20.10.0-1``,  ``20.10.0-0``,  ``20.07.1-0``,  ``20.04.1-1``,  ``20.04.1-0``,  ``20.01.0-0``,  ``19.10.0-0``,  ``19.07.0-0``,  ``19.04.1-1``,  ``19.04.0-0``,  ``19.01.0-4``,  ``19.01.0-3``,  ``18.10.1-3``,  ``18.10.1-2``,  ``18.10.1-1``,  ``0.32.0-1``,  ``0.31.1-1``,  ``0.31.1-0``,  ``0.31.0-2``,  ``0.30.2-2``,  ``0.30.1-0``,  ``0.30.0-0``,  ``0.29.1-0``,  ``0.29.0-0``,  ``0.28.2-0``,  ``0.28.1-0``,  ``0.28.0-0``,  ``0.27.6-0``,  ``0.27.5-0``,  ``0.27.4-0``,  ``0.27.2-0``,  ``0.27.1-0``,  ``0.27.0-0``,  ``0.25.1-0``,  ``0.24.2-0``,  ``0.24.1-0``,  ``0.23.4-0``,  ``0.21.3-0``,  ``0.19.3-0`` .. raw:: html
:depends coreutils: :depends curl: :depends openjdk: ``>=11,<=21`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install nextflow and update with:: mamba update nextflow To create a new environment, run:: mamba create --name myenvname nextflow with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/nextflow: (see `nextflow/tags`_ for valid values for ````) .. |downloads_nextflow| image:: https://img.shields.io/conda/dn/bioconda/nextflow.svg?style=flat :target: https://anaconda.org/bioconda/nextflow :alt: (downloads) .. |docker_nextflow| image:: https://quay.io/repository/biocontainers/nextflow/status :target: https://quay.io/repository/biocontainers/nextflow .. _`nextflow/tags`: https://quay.io/repository/biocontainers/nextflow?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/nextflow/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/nextflow/README.html