:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'ntlink' .. highlight: bash ntlink ====== .. conda:recipe:: ntlink :replaces_section_title: :noindex: Genome assembly scaffolder using long reads and minimizers :homepage: https://github.com/bcgsc/ntLink :license: GPL-3.0 :recipe: /`ntlink `_/`meta.yaml `_ .. conda:package:: ntlink |downloads_ntlink| |docker_ntlink| :versions: .. raw:: html
1.3.9-41.3.9-31.3.9-21.3.9-11.3.9-01.3.8-11.3.8-01.3.7-01.3.6-0 ``1.3.9-4``,  ``1.3.9-3``,  ``1.3.9-2``,  ``1.3.9-1``,  ``1.3.9-0``,  ``1.3.8-1``,  ``1.3.8-0``,  ``1.3.7-0``,  ``1.3.6-0``,  ``1.3.5-0``,  ``1.3.4-0``,  ``1.3.3-0``,  ``1.3.2-0``,  ``1.3.1-0``,  ``1.3.0-0``,  ``1.2.1-1``,  ``1.2.1-0``,  ``1.1.3-0``,  ``1.1.2-1``,  ``1.1.2-0``,  ``1.1.1-0``,  ``1.1.0-0``,  ``1.0.1-0`` .. raw:: html
:depends abyss: ``>=2.3.0`` :depends btllib: ``<1.7.0`` :depends make: :depends numpy: :depends python: :depends python-igraph: :depends zlib: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install ntlink and update with:: mamba update ntlink To create a new environment, run:: mamba create --name myenvname ntlink with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/ntlink: (see `ntlink/tags`_ for valid values for ````) .. |downloads_ntlink| image:: https://img.shields.io/conda/dn/bioconda/ntlink.svg?style=flat :target: https://anaconda.org/bioconda/ntlink :alt: (downloads) .. |docker_ntlink| image:: https://quay.io/repository/biocontainers/ntlink/status :target: https://quay.io/repository/biocontainers/ntlink .. _`ntlink/tags`: https://quay.io/repository/biocontainers/ntlink?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/ntlink/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/ntlink/README.html