:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'nucdiff' .. highlight: bash nucdiff ======= .. conda:recipe:: nucdiff :replaces_section_title: :noindex: NucDiff locates and categorizes differences between two closely related nucleotide sequences. :homepage: https://github.com/uio-cels/NucDiff :license: MPL-2.0 :recipe: /`nucdiff `_/`meta.yaml `_ .. conda:package:: nucdiff |downloads_nucdiff| |docker_nucdiff| :versions: ``2.0.3-1``,  ``2.0.3-0``,  ``2.0.2-3``,  ``2.0.2-2``,  ``2.0.2-0``,  ``0.1.1-0`` :depends biopython: :depends mummer: :depends python: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install nucdiff and update with:: mamba update nucdiff To create a new environment, run:: mamba create --name myenvname nucdiff with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/nucdiff: (see `nucdiff/tags`_ for valid values for ````) .. |downloads_nucdiff| image:: https://img.shields.io/conda/dn/bioconda/nucdiff.svg?style=flat :target: https://anaconda.org/bioconda/nucdiff :alt: (downloads) .. |docker_nucdiff| image:: https://quay.io/repository/biocontainers/nucdiff/status :target: https://quay.io/repository/biocontainers/nucdiff .. _`nucdiff/tags`: https://quay.io/repository/biocontainers/nucdiff?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/nucdiff/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/nucdiff/README.html