:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'odose' .. highlight: bash odose ===== .. conda:recipe:: odose :replaces_section_title: :noindex: Ortholog Direction of Selection Engine. :homepage: https://github.com/ODoSE/odose.nl :license: MIT :recipe: /`odose `_/`meta.yaml `_ .. conda:package:: odose |downloads_odose| |docker_odose| :versions: ``1.0-0`` :depends biopython: ``>=1.64`` :depends matplotlib: ``>=1.4.2`` :depends mysql-connector-python: :depends numpy: ``>=1.9.1`` :depends poster: ``>=0.8.1`` :depends python: ``2.7*`` :depends rpy2: ``>=2.8.5`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install odose and update with:: mamba update odose To create a new environment, run:: mamba create --name myenvname odose with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/odose: (see `odose/tags`_ for valid values for ````) .. |downloads_odose| image:: https://img.shields.io/conda/dn/bioconda/odose.svg?style=flat :target: https://anaconda.org/bioconda/odose :alt: (downloads) .. |docker_odose| image:: https://quay.io/repository/biocontainers/odose/status :target: https://quay.io/repository/biocontainers/odose .. _`odose/tags`: https://quay.io/repository/biocontainers/odose?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/odose/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/odose/README.html