:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'ont-fast5-api' .. highlight: bash ont-fast5-api ============= .. conda:recipe:: ont-fast5-api :replaces_section_title: :noindex: Oxford Nanopore Technologies fast5 API software :homepage: https://github.com/nanoporetech/ont_fast5_api :license: MOZILLA / MPL-2.0 :recipe: /`ont-fast5-api `_/`meta.yaml `_ .. conda:package:: ont-fast5-api |downloads_ont-fast5-api| |docker_ont-fast5-api| :versions: .. raw:: html
4.1.3-04.1.2-04.1.1-04.1.0-04.0.2-04.0.0-03.3.0-03.2.0-03.1.6-0 ``4.1.3-0``,  ``4.1.2-0``,  ``4.1.1-0``,  ``4.1.0-0``,  ``4.0.2-0``,  ``4.0.0-0``,  ``3.3.0-0``,  ``3.2.0-0``,  ``3.1.6-0``,  ``3.1.5-0``,  ``3.1.4-0``,  ``3.1.3-2``,  ``3.1.3-1``,  ``3.1.3-0``,  ``3.0.1-0``,  ``3.0.0-0``,  ``2.0.1-0``,  ``2.0.0-0``,  ``1.4.8-1``,  ``1.4.8-0``,  ``1.4.7-0``,  ``1.4.4-0``,  ``1.4.3-0``,  ``1.4.0-0``,  ``1.3.0-0``,  ``1.2.0-0``,  ``1.1.0-0``,  ``1.0.1-1``,  ``1.0.1-0``,  ``0.4.1-1``,  ``0.4.1-0`` .. raw:: html
:depends h5py: ``>=2.6`` :depends hdf5: :depends numpy: ``>=1.11`` :depends packaging: :depends progressbar33: ``>=2.3.1`` :depends python: ``>=3`` :depends six: ``>=1.9`` :depends tar: :depends zstd: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install ont-fast5-api and update with:: mamba update ont-fast5-api To create a new environment, run:: mamba create --name myenvname ont-fast5-api with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/ont-fast5-api: (see `ont-fast5-api/tags`_ for valid values for ````) .. |downloads_ont-fast5-api| image:: https://img.shields.io/conda/dn/bioconda/ont-fast5-api.svg?style=flat :target: https://anaconda.org/bioconda/ont-fast5-api :alt: (downloads) .. |docker_ont-fast5-api| image:: https://quay.io/repository/biocontainers/ont-fast5-api/status :target: https://quay.io/repository/biocontainers/ont-fast5-api .. _`ont-fast5-api/tags`: https://quay.io/repository/biocontainers/ont-fast5-api?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/ont-fast5-api/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/ont-fast5-api/README.html