:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'orthofisher'
.. highlight: bash

orthofisher
===========

.. conda:recipe:: orthofisher
   :replaces_section_title:
   :noindex:

   Orthofisher is a broadly applicable tool for automated gene identification and retrieval.

   :homepage: https://github.com/JLSteenwyk/orthofisher.git
   :documentation: https://jlsteenwyk.com/orthofisher/
   
   :license: MIT / MIT
   :recipe: /`orthofisher <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/orthofisher>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/orthofisher/meta.yaml>`_
   :links: doi: :doi:`10.1093/g3journal/jkab250`

   


.. conda:package:: orthofisher

   |downloads_orthofisher| |docker_orthofisher|

   :versions:
      
      

      ``1.1.0-0``

      

   
   :depends biopython: ``>=1.81``
   :depends numpy: ``>=1.24.0``
   :depends python: ``>=3.9``
   :depends tqdm: ``>=4.66.1``
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install orthofisher

   and update with::

      mamba update orthofisher

  To create a new environment, run::

      mamba create --name myenvname orthofisher

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/orthofisher:<tag>

   (see `orthofisher/tags`_ for valid values for ``<tag>``)


.. |downloads_orthofisher| image:: https://img.shields.io/conda/dn/bioconda/orthofisher.svg?style=flat
   :target: https://anaconda.org/bioconda/orthofisher
   :alt:   (downloads)
.. |docker_orthofisher| image:: https://quay.io/repository/biocontainers/orthofisher/status
   :target: https://quay.io/repository/biocontainers/orthofisher
.. _`orthofisher/tags`: https://quay.io/repository/biocontainers/orthofisher?tab=tags


.. raw:: html

    <script>
        var package = "orthofisher";
        var versions = ["1.1.0"];
    </script>






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-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

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