:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'paidiverpy' .. highlight: bash paidiverpy ========== .. conda:recipe:: paidiverpy :replaces_section_title: :noindex: A library to preprocess image data. :homepage: https://github.com/paidiver/paidiverpy :license: APACHE / Apache-2.0 :recipe: /`paidiverpy `_/`meta.yaml `_ .. conda:package:: paidiverpy |downloads_paidiverpy| |docker_paidiverpy| :versions: ``0.1.4-0``,  ``0.1.3-0`` :depends boto3: ``>=1.35.92`` :depends botocore: ``>=1.35.92`` :depends dask: ``>=2024.10.0`` :depends dask-image: ``2024.5.3`` :depends dask-jobqueue: ``>=0.9.0`` :depends distributed: ``>=2024.10.0`` :depends geopandas: ``>=1.0.1`` :depends geopy: ``>=2.4.1`` :depends ipython: ``>=8.26.0`` :depends jsonschema: ``>=4.23.0`` :depends matplotlib-base: ``>=3.5.0`` :depends numpy: ``<2.0`` :depends opencv: ``>=4.11`` :depends openpyxl: ``>=3.1`` :depends pandas: ``>=2.2.2`` :depends pillow: ``>=10.4.0`` :depends pydantic: :depends python: ``>=3.10`` :depends python-dotenv: ``>=1.0.1`` :depends pyyaml: ``>=6.0`` :depends rawpy: :depends scikit-image: ``>=0.24.0`` :depends scipy: ``>=1.14`` :depends shapely: ``2.0.7`` :depends tqdm: ``>=4.66.4`` :requirements: :additional platforms: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install paidiverpy and update with:: mamba update paidiverpy To create a new environment, run:: mamba create --name myenvname paidiverpy with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/paidiverpy: (see `paidiverpy/tags`_ for valid values for ````) .. |downloads_paidiverpy| image:: https://img.shields.io/conda/dn/bioconda/paidiverpy.svg?style=flat :target: https://anaconda.org/bioconda/paidiverpy :alt: (downloads) .. |docker_paidiverpy| image:: https://quay.io/repository/biocontainers/paidiverpy/status :target: https://quay.io/repository/biocontainers/paidiverpy .. _`paidiverpy/tags`: https://quay.io/repository/biocontainers/paidiverpy?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/paidiverpy/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/paidiverpy/README.html