:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'pairix' .. highlight: bash pairix ====== .. conda:recipe:: pairix :replaces_section_title: :noindex: 2D indexing on bgzipped text files of paired genomic coordinates :homepage: https://github.com/4dn-dcic/pairix :license: MIT / MIT :recipe: /`pairix `_/`meta.yaml `_ .. conda:package:: pairix |downloads_pairix| |docker_pairix| :versions: .. raw:: html
0.3.7-50.3.7-40.3.7-30.3.7-20.3.7-10.3.7-00.3.6-40.3.6-20.3.6-1 ``0.3.7-5``,  ``0.3.7-4``,  ``0.3.7-3``,  ``0.3.7-2``,  ``0.3.7-1``,  ``0.3.7-0``,  ``0.3.6-4``,  ``0.3.6-2``,  ``0.3.6-1``,  ``0.3.6-0``,  ``0.3.5-0``,  ``0.3.3-0``,  ``0.3.2-0``,  ``0.3.1-0``,  ``0.3.0-0``,  ``0.2.5-0``,  ``0.2.4-0``,  ``0.1.6-0`` .. raw:: html
:depends htslib: :depends libgcc-ng: ``>=12`` :depends libzlib: ``>=1.2.13,<1.3.0a0`` :depends python: ``>=3.10,<3.11.0a0`` :depends python_abi: ``3.10.* *_cp310`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install pairix and update with:: mamba update pairix To create a new environment, run:: mamba create --name myenvname pairix with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/pairix: (see `pairix/tags`_ for valid values for ````) .. |downloads_pairix| image:: https://img.shields.io/conda/dn/bioconda/pairix.svg?style=flat :target: https://anaconda.org/bioconda/pairix :alt: (downloads) .. |docker_pairix| image:: https://quay.io/repository/biocontainers/pairix/status :target: https://quay.io/repository/biocontainers/pairix .. _`pairix/tags`: https://quay.io/repository/biocontainers/pairix?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/pairix/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/pairix/README.html