:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'paladin' .. highlight: bash paladin ======= .. conda:recipe:: paladin :replaces_section_title: :noindex: Protein Alignment and Detection Interface :homepage: http://genomebio.org/paladin/ :developer docs: https://github.com/twestbrookunh/paladin :license: MIT :recipe: /`paladin `_/`meta.yaml `_ PALADIN is a protein sequence alignment tool designed for the accurate functional characterization of metagenomes. .. conda:package:: paladin |downloads_paladin| |docker_paladin| :versions: .. raw:: html
1.4.6-51.4.6-41.4.6-31.4.6-21.4.6-11.4.6-01.4.4-01.3.1-21.3.1-1 ``1.4.6-5``,  ``1.4.6-4``,  ``1.4.6-3``,  ``1.4.6-2``,  ``1.4.6-1``,  ``1.4.6-0``,  ``1.4.4-0``,  ``1.3.1-2``,  ``1.3.1-1``,  ``1.3.1-0`` .. raw:: html
:depends curl: :depends libgcc-ng: ``>=12`` :depends libzlib: ``>=1.2.13,<1.3.0a0`` :depends zlib: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install paladin and update with:: mamba update paladin To create a new environment, run:: mamba create --name myenvname paladin with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/paladin: (see `paladin/tags`_ for valid values for ````) .. |downloads_paladin| image:: https://img.shields.io/conda/dn/bioconda/paladin.svg?style=flat :target: https://anaconda.org/bioconda/paladin :alt: (downloads) .. |docker_paladin| image:: https://quay.io/repository/biocontainers/paladin/status :target: https://quay.io/repository/biocontainers/paladin .. _`paladin/tags`: https://quay.io/repository/biocontainers/paladin?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/paladin/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/paladin/README.html