:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'peaksql' .. highlight: bash peaksql ======= .. conda:recipe:: peaksql :replaces_section_title: :noindex: Dynamic machine learning database for genomics. :homepage: https://vanheeringen-lab.github.io/peaksql/ :developer docs: https://github.com/vanheeringen-lab/peaksql :license: MIT / MIT :recipe: /`peaksql `_/`meta.yaml `_ .. conda:package:: peaksql |downloads_peaksql| |docker_peaksql| :versions: ``0.0.4-0``,  ``0.0.3-1``,  ``0.0.3-0`` :depends numba: ``>=0.48`` :depends numpy: ``>=1.18`` :depends pandas: ``>=1.0.1`` :depends pyfaidx: ``>=0.5.1`` :depends python: ``>=3.7`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install peaksql and update with:: mamba update peaksql To create a new environment, run:: mamba create --name myenvname peaksql with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/peaksql: (see `peaksql/tags`_ for valid values for ````) .. |downloads_peaksql| image:: https://img.shields.io/conda/dn/bioconda/peaksql.svg?style=flat :target: https://anaconda.org/bioconda/peaksql :alt: (downloads) .. |docker_peaksql| image:: https://quay.io/repository/biocontainers/peaksql/status :target: https://quay.io/repository/biocontainers/peaksql .. _`peaksql/tags`: https://quay.io/repository/biocontainers/peaksql?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/peaksql/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/peaksql/README.html