:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'perl-biox-workflow-command' .. highlight: bash perl-biox-workflow-command ========================== .. conda:recipe:: perl-biox-workflow-command :replaces_section_title: :noindex: Opinionated Bioinformatics Genomics Workflow Creator :homepage: https://github.com/biosails/BioX-Workflow-Command :license: perl_5 :recipe: /`perl-biox-workflow-command `_/`meta.yaml `_ .. conda:package:: perl-biox-workflow-command |downloads_perl-biox-workflow-command| |docker_perl-biox-workflow-command| :versions: ``2.4.1-1``,  ``2.4.1-0``,  ``2.3.2-0``,  ``2.3.0-0``,  ``2.2.3-0``,  ``2.2.1-0`` :depends perl: ``>=5.26.2,<5.26.3.0a0`` :depends perl-algorithm-dependency: :depends perl-app-cpanminus: :depends perl-biosails: :depends perl-class-load: :depends perl-clone: :depends perl-config-any: :depends perl-data-walk: :depends perl-datetime: :depends perl-datetime-format-strptime: :depends perl-dbm-deep: :depends perl-escape-houdini: :depends perl-file-details: :depends perl-file-find-rule: :depends perl-file-path: :depends perl-file-slurp: :depends perl-git-wrapper: :depends perl-git-wrapper-plus: :depends perl-hash-merge: :depends perl-io-interactive: :depends perl-json: :depends perl-list-compare: :depends perl-list-moreutils: ``>=0.428`` :depends perl-list-someutils: :depends perl-list-uniq: :depends perl-log-log4perl: :depends perl-mce-shared: :depends perl-moose: :depends perl-moosex-app: ``1.39`` :depends perl-moosex-app-role-log4perl: :depends perl-moosex-getopt: :depends perl-moosex-types: :depends perl-moosex-types-path-tiny: :depends perl-namespace-autoclean: :depends perl-params-validate: :depends perl-path-tiny: :depends perl-safe: :depends perl-string-approx: :depends perl-test2: :depends perl-text-asciitable: :depends perl-text-template: :depends perl-try-tiny: :depends perl-yaml: :depends perl-yaml-libyaml: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install perl-biox-workflow-command and update with:: mamba update perl-biox-workflow-command To create a new environment, run:: mamba create --name myenvname perl-biox-workflow-command with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/perl-biox-workflow-command: (see `perl-biox-workflow-command/tags`_ for valid values for ````) .. |downloads_perl-biox-workflow-command| image:: https://img.shields.io/conda/dn/bioconda/perl-biox-workflow-command.svg?style=flat :target: https://anaconda.org/bioconda/perl-biox-workflow-command :alt: (downloads) .. |docker_perl-biox-workflow-command| image:: https://quay.io/repository/biocontainers/perl-biox-workflow-command/status :target: https://quay.io/repository/biocontainers/perl-biox-workflow-command .. _`perl-biox-workflow-command/tags`: https://quay.io/repository/biocontainers/perl-biox-workflow-command?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/perl-biox-workflow-command/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/perl-biox-workflow-command/README.html