:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'perl-sanger-cgp-battenberg'
.. highlight: bash

perl-sanger-cgp-battenberg
==========================

.. conda:recipe:: perl-sanger-cgp-battenberg
   :replaces_section_title:

   detect subclonality and copy number in matched NGS data

   :homepage: https://github.com/cancerit/cgpBattenberg
   :license: GPLv3
   :recipe: /`perl-sanger-cgp-battenberg <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/perl-sanger-cgp-battenberg>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/perl-sanger-cgp-battenberg/meta.yaml>`_

   


.. conda:package:: perl-sanger-cgp-battenberg

   |downloads_perl-sanger-cgp-battenberg| |docker_perl-sanger-cgp-battenberg|

   :versions: 1.4.1-4, 1.4.1-3, 1.4.1-2, 1.4.1-1
   
   :depends cancerit-allelecount: 
   :depends impute2: 
   :depends libgcc-ng: >=4.9
   :depends perl: >=5.26.2,<5.27.0a0
   :depends perl-file-sharedir: 
   :depends perl-file-sharedir-install: 
   :depends perl-pcap: 
   :depends perl-sanger-cgp-allelecount: 
   :requirements:

   .. rubric:: Installation

   With an activated Bioconda channel (see :ref:`set-up-channels`), install with::

      conda install perl-sanger-cgp-battenberg

   and update with::

      conda update perl-sanger-cgp-battenberg

   or use the docker container::

      docker pull quay.io/biocontainers/perl-sanger-cgp-battenberg:<tag>

   (see `perl-sanger-cgp-battenberg/tags`_ for valid values for ``<tag>``)


.. |downloads_perl-sanger-cgp-battenberg| image:: https://img.shields.io/conda/dn/bioconda/perl-sanger-cgp-battenberg.svg?style=flat
   :target: https://anaconda.org/bioconda/perl-sanger-cgp-battenberg
   :alt:   (downloads)
.. |docker_perl-sanger-cgp-battenberg| image:: https://quay.io/repository/biocontainers/perl-sanger-cgp-battenberg/status
   :target: https://quay.io/repository/biocontainers/perl-sanger-cgp-battenberg
.. _`perl-sanger-cgp-battenberg/tags`: https://quay.io/repository/biocontainers/perl-sanger-cgp-battenberg?tab=tags







Link to this page
-----------------

Render an |install-with-bioconda| badge with the following MarkDown::

   [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/perl-sanger-cgp-battenberg/README.html)

.. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat
   :target: http://bioconda.github.io/recipes/perl-sanger-cgp-battenberg/README.html