:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'pgma-simple' .. highlight: bash pgma-simple =========== .. conda:recipe:: pgma-simple :replaces_section_title: :noindex: Pgma is a simple program for building WPGMA trees. :homepage: https://github.com/BackofenLab/GraphClust :license: GNUv3 :recipe: /`pgma-simple `_/`meta.yaml `_ .. conda:package:: pgma-simple |downloads_pgma-simple| |docker_pgma-simple| :versions: ``0.1-6``,  ``0.1-5``,  ``0.1-4``,  ``0.1-3``,  ``0.1-2``,  ``0.1-1``,  ``0.1-0`` :depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install pgma-simple and update with:: mamba update pgma-simple To create a new environment, run:: mamba create --name myenvname pgma-simple with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/pgma-simple: (see `pgma-simple/tags`_ for valid values for ````) .. |downloads_pgma-simple| image:: https://img.shields.io/conda/dn/bioconda/pgma-simple.svg?style=flat :target: https://anaconda.org/bioconda/pgma-simple :alt: (downloads) .. |docker_pgma-simple| image:: https://quay.io/repository/biocontainers/pgma-simple/status :target: https://quay.io/repository/biocontainers/pgma-simple .. _`pgma-simple/tags`: https://quay.io/repository/biocontainers/pgma-simple?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/pgma-simple/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/pgma-simple/README.html